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OCT Processing Tool

The aim of my bachelor thesis was to processes OCT (optical coherence tomography) scans into a mesh. Later this should be usable in Unity. I decided to go with Houdini / Houdini Engine for this project.
A user should be able to import the scans, tweak some parameters and finally get a mesh of the retina.

processing steps:
- Import (plane with vertexcolor)
- Preprocessing (some filter)
- Edge Detection (CannyED)
- extract "Edges" to Curves
- Segmentation
- Curves to Mesh (Loft)

Example Scans from:
https://ieeexplore.ieee.org/document/8166817/

generated mesh from an OCT report with 18 Scans

generated mesh from an OCT report with 18 Scans

the first scan from an OCT report with the marked segmentation

the first scan from an OCT report with the marked segmentation

basic network

basic network